ngi_pipeline package

Subpackages

• ngi_pipeline.conductor package
  • Submodules
  • ngi_pipeline.conductor.classes module
  • ngi_pipeline.conductor.flowcell module
  • ngi_pipeline.conductor.launchers module
  • Module contents
• ngi_pipeline.database package
  • Submodules
  • ngi_pipeline.database.classes module
  • ngi_pipeline.database.communicate module
  • ngi_pipeline.database.filesystem module
  • ngi_pipeline.database.local_process_tracking module
  • ngi_pipeline.database.test_classes module
  • ngi_pipeline.database.test_communicate module
  • ngi_pipeline.database.test_filesystem module
  • ngi_pipeline.database.test_local_process_tracking module
  • Module contents
• ngi_pipeline.engines package
  • Subpackages
    • ngi_pipeline.engines.bcbio_ngi package
      • Module contents
    • ngi_pipeline.engines.piper_ngi package
      • Submodules
      • ngi_pipeline.engines.piper_ngi.database module
      • ngi_pipeline.engines.piper_ngi.local_process_tracking module
      • ngi_pipeline.engines.piper_ngi.results_parsers module
      • ngi_pipeline.engines.piper_ngi.test_database module
      • ngi_pipeline.engines.piper_ngi.utils module
      • ngi_pipeline.engines.piper_ngi.workflows module
      • Module contents
    • ngi_pipeline.engines.qc_ngi package
      • Submodules
      • ngi_pipeline.engines.qc_ngi.workflows module
      • Module contents
  • Module contents
• ngi_pipeline.log package
  • Submodules
  • ngi_pipeline.log.loggers module
  • Module contents
• ngi_pipeline.server package
  • Submodules
  • ngi_pipeline.server.background module
  • ngi_pipeline.server.handlers module
  • ngi_pipeline.server.main module
  • Module contents
• ngi_pipeline.tests package
  • Submodules
  • ngi_pipeline.tests.generate_test_data module
  • Module contents
• ngi_pipeline.utils package
  • Submodules
  • ngi_pipeline.utils.classes module
  • ngi_pipeline.utils.config module
  • ngi_pipeline.utils.filesystem module
  • ngi_pipeline.utils.parsers module
  • ngi_pipeline.utils.test_classes module
  • ngi_pipeline.utils.test_config module
  • ngi_pipeline.utils.test_filesystem module
  • ngi_pipeline.utils.test_parsers module
  • Module contents

Module contents